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This paper investigates the limitations of a multimodal model that integrates a GNN encoder with a language model, aiming to enhance predictive performance across datasets with differing node-feature dimensionalities. Despite employing a self-supervised approach and alternating optimization, the model fails to achieve significant improvements due to several identified factors, including trade-offs in anchor strength and misalignment between representation spaces. The findings highlight critical challenges in effectively transferring knowledge from text to graph representations, revealing that common assumptions about model integration may not hold in practice.
A multimodal GNN-language model fails to leverage text knowledge effectively, revealing six critical pitfalls in integration strategies.
Graph neural networks (GNNs) are widely used to represent complex interactions and relationships among entities. We investigate a multimodal model that combines two complementary ideas: a self-supervised method that enables a GNN encoder pretrained on one dataset to operate directly on another dataset with a different node-feature dimensionality, without rebuilding the model or realigning the data; and an alternating optimization method that updates a language-model module in an E-step and a GNN module in an M-step, rather than jointly training a large language model and a GNN end to end on a large graph. Despite expectations, the combined model did not sufficiently improve predictive performance. We identify six factors: (1) an external anchor in the E-step has a strength-safety trade-off: a weak anchor has little effect, whereas an overly strong anchor can damage the graph representation; (2) the knowledge of the E-step teacher is not injected directly into the GCN embedding Z; (3) the representation space constructed in the M-step is not optimized for the same objective as the E-step teacher space, resulting in a compromise representation for target classification; (4) GCN propagation averages a node's own textual information with information from its neighbors; (5) cosine alignment does not guarantee axes that are discriminative for classification, so stronger geometric alignment with the E-step text anchor need not sufficiently improve the target decision boundary or classification performance; and (6) the force that preserves the source-side self-supervised geometry in the M-step conflicts with the force that moves the representation toward the E-step teacher. We support these observations through a staged set of experiments that varies the influence of the E-step.